BIOL335-15S1 (C) Semester One 2015

Bioinformatics and Genomics

15 points

Details:
Start Date: Monday, 23 February 2015
End Date: Sunday, 28 June 2015
Withdrawal Dates
Last Day to withdraw from this course:
  • Without financial penalty (full fee refund): Sunday, 8 March 2015
  • Without academic penalty (including no fee refund): Sunday, 24 May 2015

Description

BIOL335 introduces students to the biology and evolution of genomes from across the tree of life, including the human genome and the genetics of human disease. It provides up-to-date knowledge of high throughput methods used in genome sequencing, genome-wide association studies and the study of gene expression. The course also provides students with a strong foundation in bioinformatics as a scientific discipline and as a set of practical tools for analysing and studying genomic data.

Prerequisites

30 points from: BIOL209, BIOL231, BIOL253, BCHM253, BIOL271, BCHM221, BCHM222, BCHM202, BIOL213, COSC261, COSC262, COSC265, 200 level MATH, 200 level STAT. Students with no Biology/Biochemistry papers require permission from the Head of School. RP: BIOL333 or BIOL334

Restrictions

BIOL330

Recommended Preparation

Assessment

Assessment Due Date Percentage 
Final Exam 40%
Practical computer lab assessments 20%
Genomics news & views 31 Mar 2015 20%
Practical Lab Test 29 May 2015 20%

Course links

Library portal

Additional Course Outline Information

Academic integrity

Plagiarism
It is essential that you are aware that plagiarism is considered a very serious offence by the Academic community, the University and the School of Biological Sciences. Plagiarism is defined as taking content from another work or author and presenting it, without attribution, as if it is your own work. Content here includes text (sentences or major parts of sentences), display items (graphs and tables), and overall structure (the detailed sequence of ideas). Plagiarism includes:
• re-use of previous assignments (even if each individual sentence has been rephrased to say the same thing in different words, if the overall structure is re-used)  
• copying of another student’s work (with or without their consent)
• the unreferenced use of published material or material from the internet e.g. cutting and pasting of paragraphs or pages into an essay.
For most pieces of in-term assessment you will be given information concerning the use of direct and indirect quotes from previously published work. If you are in any doubt about appropriate use of published material, please speak with a member of academic staff. If you are still unsure what plagiarism is, then seek advice.

It is a School policy that courses may request you submit work electronically for subsequent analysis of originality using Turnitin. Students agree that by taking courses in BIOL, required papers may be subject to submission for textual similarity review to Turnitin.com for the detection of plagiarism.  All submitted papers will be included as source documents in the Turnitin.com reference database solely for the purpose of detecting plagiarism of such papers.  Use of the Turnitin.com service is subject to the Terms and Conditions of Use posted on the Turnitin.com site.

Assessment and grading system

SBS Grading
A+ 90% or above
A 85 – 90
A- 80 – 84
B+ 75 – 79
B 70 – 74
B- 65 – 69
C+ 60 – 64
C 55 – 59
C- 50 – 54

A restricted pass (R) may be awarded to those who are close to a pass (i.e. an overall score of 48-49.9%) AND who have achieved at least a 40% overall score in both in-course assessment and tests/exams. If an R grade is awarded you gain credit for the course but cannot continue into papers that require this course as a pre-requisite. NB. The R grade is only available at 100 and 200 level - it cannot be awarded for third year papers.

Failing grades:   D   40-49             E  0–39

What do I do if I’m sick?

If you feel that illness, injury, bereavement or other critical circumstances have prevented you from completing an item of assessment worth 10% or more of total course assessment or have affected your performance in a test or exam, you should visit a doctor within 24 hours and submit the application form within 7 days. The application form is available on-line or from the Student Health Centre. You should also notify the course co-ordinator.  For further details on aegrotat applications, please refer to the University’s website - http://www.canterbury.ac.nz/exams/aegrotats.shtml). The aegrotat provisions are intended to assist students who have covered the work of a course but have been prevented by illness or other critical circumstances from demonstrating their mastery of the material or skills at the time of assessment – they do not excuse you from doing the assessment. If the examiner cannot assess your aegrotat application because of lack of other evidence, you may be asked to sit a special assessment if you miss a final exam. You should also expect to be required to submit additional work if you miss a major assignment (e.g. a field trip for which a major write-up is required). Please note: acceptance of the grounds for an aegrotat application does not simply excuse you from completing items of assessment if you are requested to do so. You will be given reasonable time to complete any such work.

What if I fail part of the course?

In BIOL, we require a satisfactory level of achievement in both the theoretical aspects of the discipline and in practical activities. This means you must attend all class activities and submit all items of assessment unless you have a very good reason not to (e.g. medical reasons). A student must attain an average score of at least 40% for in-course assessment and average score of at least 40% in the course exam/test, AND score at least 50% overall for the course, to be awarded a passing grade.

What’s the best way to give feedback?

We welcome constructive feedback at all times – help us to make this a valuable course for you.  We endeavour to remain approachable at all times.  If you would rather give feedback anonymously, please use the on-line course survey or talk to lab demonstrators, or your class rep (who will all report back to the staff-student liaison committee that includes a representative from each of the undergraduate classes). Class representatives will be selected from each class at the start of course.

Where to submit and collect work

Where do I hand in assignments and then collect them once marked?
All assignments should be placed in the designated collection box in the foyer of the 2nd floor of the School of Biological Sciences (near the main office), unless directed otherwise by the course co-ordinator. All assignments must be accompanied by a cover sheet signed by you stating that the submitted work is not plagiarised. Cover sheets are available on top of the collection boxes, or you can download one from the Biology website (under Undergraduate). In addition, you may also be asked to submit your work electronically (via Learn) for analysis in Turnitin. You will be given instructions on how to do this in the assignment handout.

Marked assignments can be collected from the Secretaries' Office, unless directed otherwise by the course co-ordinator. Teaching staff will endeavour to return work as soon as possible, and should contact you if there are likely to be any delays that will prevent return within the maximum 4-week timeframe.

Indicative Fees

Domestic fee $808.00

International fee $3,638.00

* All fees are inclusive of NZ GST or any equivalent overseas tax, and do not include any programme level discount or additional course-related expenses.

Minimum enrolments

This course will not be offered if fewer than 10 people apply to enrol.

For further information see School of Biological Sciences .

All BIOL335 Occurrences

  • BIOL335-15S1 (C) Semester One 2015